PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof019230

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

BES1

Protein Properties

Length: 143aa MW: 15940.1 Da PI: 10.9261

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-72985	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	182.8	1.5e-56	14	104	1	91
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 g++gr+ptw+ErEnnkrRERrRRaiaaki+aGLRa+G+yklpk++DnneVlkALc+eAGwvve+DGttyrkgskp+e+++++g+s ++p Sof019230 14 GAGGRMPTWRERENNKRRERRRRAIAAKIFAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEPDGTTYRKGSKPMERMDHIGCSXVTKPL 104 689**********************************************************************************988775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.8E-50	16	100	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MASGGSGGGL GAAGAGGRMP TWRERENNKR RERRRRAIAA KIFAGLRAHG GYKLPKHCDN 60 NEVLKALCNE AGWVVEPDGT TYRKGSKPME RMDHIGCSXV TKPLFLIPSQ STSIIQCKPY 120 FLLIPQRRIF PLPPSQRNGQ WQY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	1e-24	18	89	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	1e-24	18	89	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	1e-24	18	89	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	1e-24	18	89	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.11195	9e-60	crown\| inflorescence\| meristem\| root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	May function in brassinosteroid signaling. {ECO:0000250}.
UniProt	May function in brassinosteroid signaling. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010675300.1	2e-42	PREDICTED: BES1/BZR1 homolog protein 4
Swissprot	Q0JPT4	6e-31	BZR2_ORYSJ; Protein BZR1 homolog 2
Swissprot	Q6EUF1	6e-31	BZR4_ORYSJ; Protein BZR1 homolog 4
TrEMBL	A0A4D8Z6E1	1e-37	A0A4D8Z6E1_SALSN; Uncharacterized protein
STRING	XP_010675300.1	6e-42	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18890.1	5e-29	BES1/BZR1 homolog 3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]