PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof019257
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family WRKY
Protein Properties Length: 142aa    MW: 15128.5 Da    PI: 9.7689
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-127548PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY642.5e-2099140242
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-S CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversa 42 
                +D ++WrKYGqK++kgs++pr+YYr +s  gCp++k+vers+
  Sof019257  99 SDSWAWRKYGQKPIKGSPYPRGYYRWSSFqGCPARKQVERSR 140
                69***********************87665**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-2194140IPR003657WRKY domain
SuperFamilySSF1182901.11E-1696140IPR003657WRKY domain
SMARTSM007741.4E-1498142IPR003657WRKY domain
PROSITE profilePS5081121.89599142IPR003657WRKY domain
PfamPF031066.3E-17100139IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MSSAEDGYCS SDSPRAESPD EPLLPAAGAG AGADADAESP RAGAAGLNKR ERDLPASPTS  60
PLPPAKRSRR SVEKRVVSVP LAECGDRPRG ATGEGPPPSD SWAWRKYGQK PIKGSPYPRG  120
YYRWSSFQGC PARKQVERSR AX
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458491.11e-68probable WRKY transcription factor 65
SwissprotQ9LP561e-31WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLC5XK432e-67C5XK43_SORBI; Uncharacterized protein
STRINGSb03g034670.14e-68(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-24WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]