PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof019263

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

NF-YB

Protein Properties

Length: 142aa MW: 16124.8 Da PI: 4.8485

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-32895	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	51.3	2.9e-16	8	106	6	97
NF-YB 6 rflPianvsrimkkvlPana.......kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +lP a v r++k l a + kda e + fi ++++ a+d c++ kr+ti++dd+l al ++ f ++vepl++ l+++r+ +++k Sof019263 8 DELPRAIVRRLVKDKLSHVAggdgaevIVNKDAMVAFAESARIFIHYLSATANDMCKESKRQTISADDVLKALDEMEFSEFVEPLRTSLQEFRNKNADK 106 5789999999999988754312222225899**************************************************************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.4E-34	9	140	IPR009072	Histone-fold
Pfam	PF00808	2.1E-10	9	80	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.82E-28	10	139	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
XLTEAEVDEL PRAIVRRLVK DKLSHVAGGD GAEVIVNKDA MVAFAESARI FIHYLSATAN 60 DMCKESKRQT ISADDVLKAL DEMEFSEFVE PLRTSLQEFR NKNADKRSEA NKKQKEKRRK 120 LNEETLPQKE NDPADDAKEN DD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.3150	1e-137	bud\| inflorescence\| leaf

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021310236.1	2e-88	DNA polymerase epsilon subunit 3
TrEMBL	A0A1E5UII8	4e-89	A0A1E5UII8_9POAL; Uncharacterized protein
STRING	Pavir.Bb01701.1.p	2e-84	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	2e-38	nuclear factor Y, subunit B11