PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof019402
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family G2-like
Protein Properties Length: 139aa    MW: 14497.3 Da    PI: 7.417
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-446133729PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like54.62.3e-1738692556
    G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRla 56
               + AtPk+i+e+m+v+gLt+++vkSHLQkYRl+
  Sof019402 38 KXATPKQIREVMQVDGLTNDEVKSHLQKYRLH 69
               68****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-153472IPR009057Homeodomain-like
SuperFamilySSF466894.84E-73572IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-143869IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
XLALSGSAAS QQEGEXFLFT GVSPAVCCRF ASNSVALKXA TPKQIREVMQ VDGLTNDEVK  60
SHLQKYRLHN RRSPGAAPVS QPIMLVGGLW APQEQSSSGS PQGPLQFSGS GVAISTATVG  120
GGDSSSSDDD NKSEGYSRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.189861e-37callus| crown| inflorescence| leaf| root| seed| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307622.14e-49transcription factor HHO5-like
TrEMBLA0A059Q2Z52e-63A0A059Q2Z5_9POAL; DNA binding protein
STRINGSb01g007130.11e-48(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25790.11e-18G2-like family protein