PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof019425
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family BBR-BPC
Protein Properties Length: 139aa    MW: 15078.6 Da    PI: 7.4061
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17358092PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind36.81.3e-113117288
  GAGA_bind   2 dddgsre.rnkgyyepaaslkenlglqlmssia.erdaki..........rernlalsekkaavaerd...........................maflq 62 
                d+dgs   rn+g+y+     k nlglqlmss++ +rd+k           + ++ a ++                                    m+f +
  Sof019425   3 DEDGSLGiRNWGFYDTV---KGNLGLQLMSSVPpDRDTKSllpngaflqhHGHHNAPHQL-------HmqhsqhprgpaaggasggmptesqpihMDFSR 92 
                45677779******987...************99******77777666653333333333.......02233344669********************** PP

  GAGA_bind  63 rdkalaernkalverdnkllalllve 88 
                ++++l++  ++ ++ ++k+l+   ++
  Sof019425  93 NEAWLHQ-SHHQHPCEQKVLHSRSIR 117
                *******.888888899988876554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012266.2E-51138IPR010409GAGA-binding transcriptional activator
PfamPF062172.3E-153119IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MDDEDGSLGI RNWGFYDTVK GNLGLQLMSS VPPDRDTKSL LPNGAFLQHH GHHNAPHQLH  60
MQHSQHPRGP AAGGASGGMP TESQPIHMDF SRNEAWLHQS HHQHPCEQKV LHSRSIRPAG  120
HAGHSGHGGH SGHVGHICA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.112990.0meristem| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:12795701}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461880.11e-75protein Barley B recombinant
RefseqXP_021309578.11e-75protein Barley B recombinant
SwissprotQ8GUC31e-26BBR_HORVU; Protein Barley B recombinant
TrEMBLC5X4B53e-74C5X4B5_SORBI; Uncharacterized protein
STRINGSb02g009750.14e-75(Sorghum bicolor)
STRINGSb02g009782.14e-75(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.38e-09basic pentacysteine 2