PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof019445
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GRAS
Protein Properties Length: 138aa    MW: 15031 Da    PI: 5.6514
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-18936PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS138.28.6e-431130243374
       GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                eq+++h s+sFl+rf+ea++yysalfdsl+a+++++s er++vE++ll+rei+nv+a  g +r+ + + +++Wre+l ++GF++++l  +aa+qa+lll 
  Sof019445   1 EQDLSH-SGSFLARFVEAIHYYSALFDSLDASYGEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFRAASLAGSAAAQASLLLG 98 
                677777.899****************************************************999987.******************************* PP

       GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                +++sdgy++ ee+g+l lgWkd  L+++SaWr
  Sof019445  99 MFPSDGYTLVEENGALKLGWKDLCLLTASAWR 130
                *******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.9561110IPR005202Transcription factor GRAS
PfamPF035143.0E-401130IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
EQDLSHSGSF LARFVEAIHY YSALFDSLDA SYGEDSPERH VVEQQLLSRE IRNVLAVGGP  60
ARTGDVKFGS WREKLAQSGF RAASLAGSAA AQASLLLGMF PSDGYTLVEE NGALKLGWKD  120
LCLLTASAWR PIQMPPCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-731131250380Protein SCARECROW
5b3h_A6e-731131249379Protein SCARECROW
5b3h_D6e-731131249379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.36181e-159bud| callus| crown| inflorescence| meristem| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in early stages of lateral root primordium formation, becoming restricted to the endodermal cell lineage at later stages. {ECO:0000269|PubMed:10948251}.
UniprotTISSUE SPECIFICITY: Expressed in the root endodermis and in a single file of cells through the quiescent center. {ECO:0000269|PubMed:10948251}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in establishing and maintaining the correct radial pattern in the root apical meristem. {ECO:0000269|PubMed:10948251}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317511.15e-93protein SCARECROW
SwissprotQ9FUZ74e-93SCR_MAIZE; Protein SCARECROW
TrEMBLA0A1Z5RG851e-91A0A1Z5RG85_SORBI; Uncharacterized protein
TrEMBLC0P5W34e-93C0P5W3_MAIZE; Uncharacterized protein
STRINGSb05g001500.16e-93(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.14e-62GRAS family protein
Publications ? help Back to Top
  1. Lim J, et al.
    Conservation and diversification of SCARECROW in maize.
    Plant Mol. Biol., 2005. 59(4): p. 619-30
    [PMID:16244911]