PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof019682
Common NameGAI
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GRAS
Protein Properties Length: 133aa    MW: 14276.5 Da    PI: 5.1282
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-84738PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS148.28e-462129257374
       GRAS 257 flealeyysalfdsleak........lpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s 346
                f+e+l+yys++fdsle           p+++  +++++++++lgr+i+nvvacegaer+erhetl++Wr+rl+ +GF+pv+l+++a+kqa++ll+ ++ +
  Sof019682   2 FTESLHYYSTMFDSLEGAgsgqstdaSPAAAgGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRNRLGGSGFEPVHLGSNAYKQASTLLALFNgG 101
                99*************7775777766544444799****************************************************************** PP

       GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                dgy+vee++g+l+lgW++rpL+++SaWr
  Sof019682 102 DGYKVEEKDGCLTLGWHTRPLIATSAWR 129
                ***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.2231108IPR005202Transcription factor GRAS
PfamPF035142.8E-432129IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
XFTESLHYYS TMFDSLEGAG SGQSTDASPA AAGGTDQVMS EVYLGRQICN VVACEGAERT  60
ERHETLGQWR NRLGGSGFEP VHLGSNAYKQ ASTLLALFNG GDGYKVEEKD GCLTLGWHTR  120
PLIATSAWRL AAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-162128263378Protein SCARECROW
5b3h_A5e-162128262377Protein SCARECROW
5b3h_D5e-162128262377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.21190.0bud| crown| inflorescence| leaf| meristem| root| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466594.14e-87DELLA protein DWARF8
SwissprotQ9ST486e-84DWRF8_MAIZE; DELLA protein DWARF8
TrEMBLA0A3R5SHM47e-91A0A3R5SHM4_9POAL; GAI2
TrEMBLA0A451FPA61e-89A0A451FPA6_9POAL; GAI1
TrEMBLQ0HA218e-91Q0HA21_SACOF; Truncated gibberellic acid-insensitive isoform 1
TrEMBLQ0HA241e-89Q0HA24_SACOF; Gibberellic acid-insensitive
STRINGSb01g010660.11e-86(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.14e-65GRAS family protein
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]