PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof019780
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family TCP
Protein Properties Length: 131aa    MW: 14004.9 Da    PI: 10.8441
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17396790PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP57.65e-185798243
        TCP  2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdk 43
               + k+++++++hT v+ R+RR+R++a caar+ +L++eLG++ 
  Sof019780 57 PXKRTSTKDRHTXVDXRGRRIRMPAICAARVVQLTRELGHKD 98
               689*************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.4E-136198IPR005333Transcription factor, TCP
PROSITE profilePS513698.61263117IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MDVTGDAGGG RRPNFPLQLL EKKEEQPCST SPAAAAGAGA NGSAGSGEMM XMKKVAPXKR  60
TSTKDRHTXV DXRGRRIRMP AICAARVVQL TRELGHKDGR GDNRMGCCNR RDPRVIEGNG  120
PRDHSGPLLP G
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.74590.0inflorescence| leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436745.11e-53transcription factor TCP14
TrEMBLC5Z7272e-52C5Z727_SORBI; Uncharacterized protein
STRINGSb10g008030.14e-53(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.14e-22TCP family protein