PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof019849
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 129aa    MW: 14728.7 Da    PI: 8.487
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-65947PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.61.1e-1190125242
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeA 42 
                +y+GVr+++ + +W +eIrdp+    +  r++lg+f +  eA
  Sof019849  90 QYRGVRRRP-WCKWSCEIRDPV----KgVRVWLGTFLY-AEA 125
                69*******.**********75....44********99.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.5E-490124IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-1090124IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-1690125IPR001471AP2/ERF domain
PROSITE profilePS5103214.85590129IPR001471AP2/ERF domain
PfamPF008471.7E-691125IPR001471AP2/ERF domain
PRINTSPR003672.1E-691102IPR001471AP2/ERF domain
PRINTSPR003672.1E-6113129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MCGGAILAEL IPSAPARRGK GKQRKADDFE AAFREFDEDS EEDEEMMEAG EEVEVVSKPA  60
FVFRASSSLP TKPRARQEEQ PNRRRKPAQQ YRGVRRRPWC KWSCEIRDPV KGVRVWLGTF  120
LYAEAVGLV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465747.11e-48ethylene-responsive transcription factor 1
TrEMBLA0A2T7CGR17e-39A0A2T7CGR1_9POAL; Uncharacterized protein
TrEMBLA0A2T8I6497e-39A0A2T8I649_9POAL; Uncharacterized protein
STRINGSb01g045040.15e-48(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-16ethylene-responsive element binding protein