PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof019863
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NAC
Protein Properties Length: 129aa    MW: 15126.4 Da    PI: 10.4654
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17368970PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1484.7e-4691291121
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                lppGf FhP+d el+++yLk+k+ g+k+e  + i+evdiyk+ePwdLp+  ++  ++++w+fF++rd+ky+tg+r+nrat +gyWk+tgkd++++  +++
  Sof019863   9 LPPGFGFHPSDPELISHYLKRKILGQKIEY-DLIPEVDIYKHEPWDLPAkcNLPIKDNKWHFFASRDRKYPTGSRSNRATLAGYWKSTGKDRAIKL-NKR 106
                79***************************9.99***************6244555999**************************************.999 PP

        NAM  99 lvglkktLvfykgrapkgektdW 121
                + g+kktLvf++gr p+g++t+W
  Sof019863 107 TLGTKKTLVFHEGRPPSGRRTEW 129
                *********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-484129IPR003441NAC domain
PROSITE profilePS5100547.7929129IPR003441NAC domain
PfamPF023654.8E-2010129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MEVLRDMHLP PGFGFHPSDP ELISHYLKRK ILGQKIEYDL IPEVDIYKHE PWDLPAKCNL  60
PIKDNKWHFF ASRDRKYPTG SRSNRATLAG YWKSTGKDRA IKLNKRTLGT KKTLVFHEGR  120
PPSGRRTEW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-42612912133Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.92550.0callus| meristem| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312344.11e-93NAC domain-containing protein 74
SwissprotQ7GCL79e-79NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBLA0A1B6Q2Q73e-92A0A1B6Q2Q7_SORBI; Uncharacterized protein
STRINGSb03g010130.16e-93(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.16e-56NAC domain containing protein 86
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]