PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof019882
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 128aa    MW: 12913.5 Da    PI: 11.814
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-123967PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.96.6e-1094127341
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaee 41 
                y+G+r ++ +g+Wv+ Ir+p+    + +r++lg++ tae+
  Sof019882  94 YRGIR-CR-SGKWVSKIREPR----KaRRIWLGTYPTAEM 127
                9***9.55.6*********94....36**********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.008893127IPR001471AP2/ERF domain
PROSITE profilePS5103212.2693128IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-793127IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-1294127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MAEQPPRPPF SFPAGGASAT GAGGGLGFGS SLASFSFSGG AAAAAASGRR RSVVRGGGSI  60
ISCHGAAAGD GDRHRDEPGI GGAVAAASGK HAFYRGIRCR SGKWVSKIRE PRKARRIWLG  120
TYPTAEMP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.176480.0inflorescence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-17ERF family protein