PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof019923
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C2H2
Protein Properties Length: 127aa    MW: 13947 Da    PI: 10.8774
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-105257PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.6e-077496123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C+ Cgk F r  nL+ H r H
  Sof019923 74 YVCEVCGKGFQRDQNLQLHRRGH 96
               9********************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.08E-67297No hitNo description
PROSITE profilePS5015711.8227496IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.3E-77496IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00817496IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MMLKDLAAIQ QHQLAAAADE NMSNLTSASG DQASVSSHPA PPLAKKKRSL PGNPDPDAEV  60
IALSPRTLMA TNRYVCEVCG KGFQRDQNLQ LHRRGHNLPW KLKQRNPKEV VRKEGVRVPG  120
APLRAPR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.131591e-166bud| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622491.16e-70protein indeterminate-domain 7
SwissprotQ9LRW78e-45IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A0D3EKM25e-69A0A0D3EKM2_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9Y4H89e-69A0A0D9Y4H8_9ORYZ; Uncharacterized protein
TrEMBLA2WLN21e-68A2WLN2_ORYSI; Uncharacterized protein
TrEMBLI1NL369e-69I1NL36_ORYGL; Uncharacterized protein
STRINGOGLUM01G06620.11e-69(Oryza glumipatula)
STRINGORGLA01G0057600.12e-69(Oryza glaberrima)
STRINGOBART01G06050.18e-70(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.12e-46indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]