PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof019978
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family SBP
Protein Properties Length: 126aa    MW: 12872 Da    PI: 8.3544
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17392063PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP58.22.1e-1874116143
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfC 43 
                +C v+gC++dls+++eyhrrhkvCevhsk+p v+v g+eqrf 
  Sof019978  74 ACSVDGCRSDLSRCREYHRRHKVCEVHSKTPGVVVGGQEQRFX 116
                5****************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.6E-1968116IPR004333Transcription factor, SBP-box
PROSITE profilePS5114115.28172126IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-1774115IPR004333Transcription factor, SBP-box
PfamPF031102.4E-1275115IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MDWAAASGAP SWGAAATDPG PTMLSFAGPS SSTSPAADAE VRLQDFAVGL AQSARPAGAG  60
RRSRAAGGSA GAEACSVDGC RSDLSRCREY HRRHKVCEVH SKTPGVVVGG QEQRFXSAMQ  120
PVSHAV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.18460.0bud| inflorescence| meristem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001352598.15e-55SBP-transcription factor 3
RefseqXP_008677048.11e-54squamosa promoter-binding protein-like (SBP domain) transcription factor family protein isoform X1
RefseqXP_008677050.15e-55squamosa promoter-binding protein-like (SBP domain) transcription factor family protein isoform X2
TrEMBLA0A3L6F5961e-53A0A3L6F596_MAIZE; Putative squamosa promoter-binding-like protein 19
TrEMBLC0P8S51e-53C0P8S5_MAIZE; SBP transcription factor
STRINGGRMZM2G106798_P012e-54(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.16e-16SBP family protein