PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof020105
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB_related
Protein Properties Length: 122aa    MW: 13518.5 Da    PI: 7.697
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-96446PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.8e-14556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     ++rWT+eE+  l+ +v+++G+g W+tI r          R+  ++k++w+++
        Sof020105  5 KQRWTPEEEAALKAGVAKHGPGKWRTILRDSDfsellRLRSNVDLKDKWRNL 56
                     79***********************************99***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.226161IPR017930Myb domain
SuperFamilySSF466899.33E-16259IPR009057Homeodomain-like
SMARTSM007175.9E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-14556IPR009057Homeodomain-like
PfamPF002492.4E-10556IPR001005SANT/Myb domain
CDDcd116607.09E-19656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MGAPKQRWTP EEEAALKAGV AKHGPGKWRT ILRDSDFSEL LRLRSNVDLK DKWRNLSVTA  60
GGYGSREKAR MALKKGRRVV PKLTAEPMDV DGKDMDIAHD AIIEAEPLAM ALEPLAIEES  120
PD
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455864.13e-80single myb histone 1
SwissprotB4FT403e-75SMH2_MAIZE; Single myb histone 2
TrEMBLA0A0C6WCL38e-82A0A0C6WCL3_9POAL; ScMYB54 protein
STRINGSb03g026470.11e-79(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.38e-37telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]