PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof020131

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

MYB_related

Protein Properties

Length: 121aa MW: 13313.1 Da PI: 9.8363

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17268392	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.9	2e-12	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT E++++++a +++ + Wk+I +++g +t q++s+ qky Sof020131 67 RESWTNPEHDKFLEALQLFDRD-WKKIEAYVG-FKTVIQIRSHAQKY 111 789***************77.*****.9**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.24E-16	61	117	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.867	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-6	65	117	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-18	65	114	IPR006447	Myb domain, plants
SMART	SM00717	3.4E-9	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	3.4E-10	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.44E-7	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MVSMSTTPHP LDPSVPAVAG GGKEEAREAA AAAAAAAPTA VPVPPVGNDD DEGPRRVRKP 60 YTITKSRESW TNPEHDKFLE ALQLFDRDWK KIEAYVGFKT VIQIRSHAQK YFLKVQKNGT 120 R

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.6544	0.0	callus\| inflorescence\| leaf\| root\| seed\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004964289.1	4e-57	protein REVEILLE 6 isoform X1
Refseq	XP_022681593.1	4e-57	protein REVEILLE 6 isoform X2
Swissprot	Q8H0W3	5e-38	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A0C6WCQ0	6e-63	A0A0C6WCQ0_9POAL; ScMYB45 protein
TrEMBL	A0A3L6DFN2	4e-62	A0A3L6DFN2_MAIZE; WAT1-related protein
STRING	GRMZM2G135052_P01	2e-59	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.2	1e-38	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]