PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof020181
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family SRS
Protein Properties Length: 119aa    MW: 12114.2 Da    PI: 8.2339
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-786133733PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70239.32.1e-1295119327
     DUF702   3 sgtasCqdCGnqakkdCaheRCRtC 27 
                 g++sCqdCGnqakkdC+h+RCRtC
  Sof020181  95 GGGVSCQDCGNQAKKDCVHQRCRTC 119
                5789********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.2E-997119IPR007818Protein of unknown function DUF702
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MAGSFPLGGG GHSREAPASS VPPVHPSDAA SFLYAARAGA GLQLWQQHEQ QQQHPFYTSN  60
IIRFSDDPSP GAAPSLTGAA SSSSSRGTRS GGGGGGGVSC QDCGNQAKKD CVHQRCRTC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.152971e-70callus| inflorescence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670344.12e-45protein SHI RELATED SEQUENCE 1
TrEMBLA0A1D6ETR15e-44A0A1D6ETR1_MAIZE; Protein SHI RELATED SEQUENCE 1
STRINGGRMZM2G080295_P018e-45(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.15e-09Lateral root primordium (LRP) protein-related