PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof020182
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GATA
Protein Properties Length: 119aa    MW: 13152 Da    PI: 11.3679
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-857133728PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA35.21.7e-112261135
       GATA 11 lWRrgpdgnktLCnaCGlyyrkkgl 35
               lWR gp g+ +LCnaCG++yrkk++
  Sof020182  2 LWRGGPCGPMSLCNACGIRYRKKRR 26
               8*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.103.1E-7226IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.09E-6225No hitNo description
SMARTSM004010.0045239IPR000679Zinc finger, GATA-type
PfamPF003202.6E-9226IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
XLWRGGPCGP MSLCNACGIR YRKKRREAMG LDSSSKAGGG NEQQQQRKKK ATAAAAAAAA  60
SKREREKEAD EVTVELRAVG FGKEVVLKQR RRMRRRRRLG EEERAAILLM ALSSGVVYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18894QRRRMRR
29095RRMRRR
39097RRMRRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466151.11e-52GATA transcription factor 16 isoform X1
RefseqXP_021306678.11e-52GATA transcription factor 16 isoform X2
TrEMBLA0A1B6QH043e-51A0A1B6QH04_SORBI; Uncharacterized protein
TrEMBLC5WTZ13e-51C5WTZ1_SORBI; Uncharacterized protein
STRINGSb01g002270.15e-52(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-12GATA transcription factor 16