PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof020323

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

Protein Properties

Length: 114aa MW: 13266.8 Da PI: 5.299

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-108800	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.1	2.7e-12	15	80	22	88
H.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 22 faeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrs 88 f ++hg+++++ ++l++ grsW+v+l+ ++++ ++ GW +F+ +n L++gD++ F+++++ Sof020323 15 FQNAHGYVPRRRVELQM---AGRSWTVNLK--RSKRLlgdrSAFKYGWHQFCVDNVLEVGDVCFFRVIREG 80 56677888888766664...68*****4..4433244458899*******************98764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	10.137	1	109	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	8.6E-17	13	107	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.9E-12	14	80	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.5E-9	16	80	IPR003340	B3 DNA binding domain
CDD	cd10017	8.70E-10	33	81	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
NLREAEPVPE RARGFQNAHG YVPRRRVELQ MAGRSWTVNL KRSKRLLGDR SAFKYGWHQF 60 CVDNVLEVGD VCFFRVIREG SGCGDEDEEW EPEEEDDEHV LKVEVRKNNG TFVS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021311974.1	9e-45	B3 domain-containing protein Os03g0212300
Swissprot	Q10Q26	3e-27	Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBL	A0A1Z5SAS4	3e-43	A0A1Z5SAS4_SORBI; Uncharacterized protein
TrEMBL	C5WTM5	2e-43	C5WTM5_SORBI; Uncharacterized protein
STRING	Sb01g043110.1	3e-44	(Sorghum bicolor)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]