PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof020341
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family G2-like
Protein Properties Length: 114aa    MW: 11813.8 Da    PI: 4.3561
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17289420PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like50.44.8e-1683114233
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktil 33 
                prlrWtpeLH +F++av++LGG+++AtPk +l
  Sof020341  83 PRLRWTPELHLCFLRAVDRLGGQDRATPKLVL 114
                9****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-1379114IPR009057Homeodomain-like
SuperFamilySSF466891.97E-580113IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-1182113IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MEGVSSKGFD DESSADQLLP SVGEAGDDGE GDDAGGADVP RGHDGSSSNS STVELDEAGG  60
DSGRMAAGAS PSSVRPYVRS KNPRLRWTPE LHLCFLRAVD RLGGQDRATP KLVL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.165680.0inflorescence| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321607.11e-51uncharacterized protein LOC8064764
TrEMBLC5YQ153e-50C5YQ15_SORBI; Uncharacterized protein
STRINGSb08g000510.15e-51(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.11e-21G2-like family protein