PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof020364
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family SBP
Protein Properties Length: 113aa    MW: 11351.6 Da    PI: 8.227
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-91313PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP47.45e-1577110134
                --SSTT-----TT--HHHHHTT--HHHHT-S-EE CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvl 34 
                +C v+gC++dls+++eyhrrhkvCe+hsk+pvv+
  Sof020364  77 ACSVDGCRSDLSRCREYHRRHKVCEAHSKTPVVV 110
                5******************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.2E-1471112IPR004333Transcription factor, SBP-box
PROSITE profilePS5114114.13575113IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.93E-1477113IPR004333Transcription factor, SBP-box
PfamPF031102.9E-978111IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MDWAAASRAP SWGAAATDPG PTMLSFAGPS SSTSPAADAE VRLQDFATGL AQSARLAGAA  60
GAGRRSCMAG GSAGAEACSV DGCRSDLSRC REYHRRHKVC EAHSKTPVVV GGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.18461e-133bud| inflorescence| meristem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001352598.11e-50SBP-transcription factor 3
RefseqXP_008677048.13e-50squamosa promoter-binding protein-like (SBP domain) transcription factor family protein isoform X1
RefseqXP_008677050.11e-50squamosa promoter-binding protein-like (SBP domain) transcription factor family protein isoform X2
TrEMBLC0P8S53e-49C0P8S5_MAIZE; SBP transcription factor
STRINGGRMZM2G106798_P015e-50(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-13SBP family protein