PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof020395
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C3H
Protein Properties Length: 112aa    MW: 12745 Da    PI: 9.4717
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17343073PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH361.2e-111538326
               S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
               ++ C++++rtG C++G +CkF+H+
  Sof020395 15 EPDCSYYMRTGMCRFGMTCKFNHP 38
               799********************8 PP
2zf-CCCH41.52.2e-136084327
               S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
               +++C+++++tGtCk+G++CkF+H++
  Sof020395 60 QPECQYYLKTGTCKFGATCKFHHPR 84
               799********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.1031240IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-41239IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-81538IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-61640IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-41839IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-65784IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2445785IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-116084IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-76086IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-66385IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MAPMELGPYP ERVGEPDCSY YMRTGMCRFG MTCKFNHPAH RKLAVAAARM KGEYPQRIGQ  60
PECQYYLKTG TCKFGATCKF HHPREKAAMA TPVQVDELGY PLRPMKRSVL II
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.30820.0callus| inflorescence| meristem| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450713.15e-66zinc finger CCCH domain-containing protein 63
SwissprotQ2R4J48e-63C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A1Z5RI566e-66A0A1Z5RI56_SORBI; Uncharacterized protein
TrEMBLA0A1Z5RII61e-64A0A1Z5RII6_SORBI; Uncharacterized protein
STRINGSb05g013190.12e-65(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.12e-53zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]