PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof020637
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family SBP
Protein Properties Length: 103aa    MW: 10477.9 Da    PI: 10.9831
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17395809PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP73.92.8e-2353103150
                --SSTT-----.TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEE CS
        SBP   1 lCqvegCeadl.seakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfh 50 
                +Cq+e+C+a+l ++ k y+rrhkvCe+hskapvvlv+gl+qrfCqqCsrfh
  Sof020637  53 RCQAERCNANLmTDEKPYNRRHKVCEAHSKAPVVLVAGLRQRFCQQCSRFH 103
                6*********735789**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.1E-2449103IPR004333Transcription factor, SBP-box
PROSITE profilePS5114120.08551103IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-2152103IPR004333Transcription factor, SBP-box
PfamPF031101.9E-1754103IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MAAVGDAFSS SPVAARRGVA AGGAASSSSP VPVAARRGAA AAASVAAGGG GPRCQAERCN  60
ANLMTDEKPY NRRHKVCEAH SKAPVVLVAG LRQRFCQQCS RFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-1846103259squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.222151e-177inflorescence
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462902.12e-33squamosa promoter-binding-like protein 13
SwissprotQ387413e-20SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A3L6FUY83e-33A0A3L6FUY8_MAIZE; Squamosa promoter-binding-like protein 13
STRINGSb02g034180.18e-33(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-18squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]