PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof020647
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 102aa    MW: 11246.5 Da    PI: 12.5145
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-40923PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.81.7e-105992136
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36
               + ++GVr++   grWv+e+r+p ++g  +r +lg++
  Sof020647 59 PVFRGVRRRGAAGRWVCEVRVPXKRG--ARLWLGTY 92
               579******************98876..*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-65992IPR001471AP2/ERF domain
PROSITE profilePS5103215.22460102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-1460102IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-860101IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MDMGRLQQHA TSSSSTSTSA SSSSSKQNKA VWTPSSSSSP QPPKKRPAGR TKFRETRHPV  60
FRGVRRRGAA GRWVCEVRVP XKRGARLWLG TYLAAEPPVR AH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.236861e-143bud| crown
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957402.17e-37dehydration-responsive element-binding protein 1H
SwissprotA2Z3894e-31DRE1A_ORYSI; Dehydration-responsive element-binding protein 1A
TrEMBLA0A3L6G6D68e-37A0A3L6G6D6_MAIZE; Dehydration-responsive element-binding protein 1H
STRINGSi030869m3e-36(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.11e-13dehydration response element B1A