PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof020673

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

NAC

Protein Properties

Length: 101aa MW: 11994.8 Da PI: 9.0637

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-67994	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	91.6	1.3e-28	9	88	1	79
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratk 79 lppGf FhP+d el+++yLk+k+ g+k+e + i+evdiyk+ePwdLp+ ++ ++++w+fF++rd+ky+tg+r+nrat Sof020673 9 LPPGFGFHPSDPELISHYLKRKILGQKIEY-DLIPEVDIYKHEPWDLPAkcNLPIKDNKWHFFASRDRKYPTGSRSNRATL 88 79*************************9.99***********6244555999******************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-30	4	87	IPR003441	NAC domain
PROSITE profile	PS51005	29.247	9	101	IPR003441	NAC domain
Pfam	PF02365	1.2E-10	10	86	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MEVLRDMHLP PGFGFHPSDP ELISHYLKRK ILGQKIEYDL IPEVDIYKHE PWDLPAKCNL 60 PIKDNKWHFF ASRDRKYPTG SRSNRATLRW LLEINLGRTE P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-25	6	87	12	91	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.9255	1e-166	callus\| meristem\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:10660065}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt and cold stresses. {ECO:0000269\|PubMed:18813954}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021312344.1	2e-60	NAC domain-containing protein 74
Swissprot	Q7GCL7	7e-49	NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBL	A0A1B6Q2Q7	4e-59	A0A1B6Q2Q7_SORBI; Uncharacterized protein
STRING	Sb03g010130.1	7e-60	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	1e-35	NAC domain containing protein 86

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]