PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof020809
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bHLH
Protein Properties Length: 94aa    MW: 10587.4 Da    PI: 9.6379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-81502PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH246.9e-0840721854
               HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
               +++ +L++l+P+ a     k  + +++L +Av+YIk+L
  Sof020809 40 KRLKKLQDLVPNmA-----KQTNTSDMLDLAVDYIKEL 72
               6899********55.....779**************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.1692272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-43278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-113884IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-53972IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-134086IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.58E-54177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MDVYLQPQQN SVASKVRVKV AAQLTREALL RGKKEQGLAK RLKKLQDLVP NMAKQTNTSD  60
MLDLAVDYIK ELKDQVEKLK HDQANCCCLG NKSC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001332786.13e-37uncharacterized protein LOC100284495
TrEMBLA0A2P1L3F21e-38A0A2P1L3F2_9POAL; Flowering BHLH 1
STRINGSi001123m9e-34(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-17bHLH family protein