PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof020909
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bHLH
Protein Properties Length: 87aa    MW: 9749.99 Da    PI: 8.5174
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-102830PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-0813541454
               HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
        HLH 14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
               d+iN+ +++L+ llP++s + ++ + s +  L++++ YIksL
  Sof020909 13 DEINELISKLQALLPESSrRRNASRSSASKLLKETCAYIKSL 54
               68**************6647777889***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.508154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-91369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-81373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-61354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSSSGRRGRI SDDEINELIS KLQALLPESS RRRNASRSSA SKLLKETCAY IKSLHQEVDD  60
LSERLSGLMS TMDNDSPQAE IIRSLLR
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149761.12e-52uncharacterized protein LOC100283388
RefseqXP_002468422.12e-52transcription factor ILI3
RefseqXP_008677317.12e-52DNA binding protein isoform X1
RefseqXP_021318617.12e-52transcription factor ILI3
SwissprotA2XD159e-34ILI3_ORYSI; Transcription factor ILI3
SwissprotQ10R479e-34ILI3_ORYSJ; Transcription factor ILI3
TrEMBLA0A317Y6E15e-51A0A317Y6E1_MAIZE; Transcription factor ILI3
TrEMBLB6THX05e-51B6THX0_MAIZE; BHLH transcription factor
TrEMBLC5WVX85e-51C5WVX8_SORBI; Uncharacterized protein
STRINGSb01g045690.19e-52(Sorghum bicolor)
STRINGGRMZM2G159456_P019e-52(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.18e-23bHLH family protein