PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof020935
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ZF-HD
Protein Properties Length: 86aa    MW: 8856.72 Da    PI: 8.1444
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17434748PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1024e-321569358
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                  v+Y+eC++NhAas+GghavDGC+Efm+s g+ gtaaal CaACgCHR+FHRreve
    Sof020935 15 VVHYRECQRNHAASIGGHAVDGCREFMAS-GAVGTAAALACAACGCHRSFHRREVE 69
                 799*************************9.888********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.1E-301668IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-261768IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-101869IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.8021867IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MANGTAAARS KEAKVVHYRE CQRNHAASIG GHAVDGCREF MASGAVGTAA ALACAACGCH  60
RSFHRREVEA GDNRDCSSNS TSTTSG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.164901e-147root| seed
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301405.11e-42mini zinc finger protein 1
SwissprotB8BIU83e-28MIF1_ORYSI; Mini zinc finger protein 1
SwissprotQ2RB283e-28MIF1_ORYSJ; Mini zinc finger protein 1
TrEMBLC5YQS12e-41C5YQS1_SORBI; Uncharacterized protein
STRINGSb08g001830.14e-42(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.19e-16mini zinc finger 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]