PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof021066
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family LBD
Protein Properties Length: 73aa    MW: 8103.44 Da    PI: 8.5021
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-54991PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260606.5e-19473164
     DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvye 64
               +C++C+vlr++C++ C+++p++     p++q++++ +++k++G++ +l+ll+a+p+e+ r+++++sl+ye
  Sof021066  4 SCNGCRVLRKGCSDACTIRPCLqwidtPEAQANATVFLAKFYGRAGLLNLLAAAPDEHtRPAVFRSLLYE 73
               6*****************************************************87777**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.3373IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-14473IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDACT IRPCLQWIDT PEAQANATVF LAKFYGRAGL LNLLAAAPDE  60
HTRPAVFRSL LYE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.156791e-44bud| callus| crown| leaf| meristem| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}.
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142806.17e-42uncharacterized protein LOC100275184
SwissprotQ9M8863e-37LBD41_ARATH; LOB domain-containing protein 41
SwissprotQ9ZW962e-37LBD40_ARATH; LOB domain-containing protein 40
TrEMBLA0A317YCU82e-40A0A317YCU8_MAIZE; LOB domain-containing protein 41
TrEMBLB6SPU92e-40B6SPU9_MAIZE; LOB domain-containing protein 42
STRINGGRMZM2G060544_P013e-41(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.17e-34LOB domain-containing protein 40