PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof021146
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB_related
Protein Properties Length: 57aa    MW: 6737.67 Da    PI: 9.5698
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-106084PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271e-083457124
                     TSSS-HHHHHHHHHHHHHTTTT-H CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtW 24
                     +g+WT eEde+lv+ v+++G ++W
        Sof021146 34 KGPWTDEEDEQLVRFVRLFGERRW 57
                     79********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.7672957IPR017930Myb domain
SuperFamilySSF466894.45E-63157IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-83357IPR009057Homeodomain-like
PfamPF002491.2E-63457IPR001005SANT/Myb domain
CDDcd001671.80E-53657No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
MSSSLLCSRR NHKKDRDGEQ VQVIMSTAAA VMRKGPWTDE EDEQLVRFVR LFGERRW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.17293e-60crown| inflorescence| leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303706.14e-24transcription factor MYB59-like
TrEMBLA0A1Z5R1588e-23A0A1Z5R158_SORBI; Uncharacterized protein
STRINGGRMZM2G013581_P015e-20(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.12e-08myb domain protein 48