PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof021192
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ZF-HD
Protein Properties Length: 214aa    MW: 22176.3 Da    PI: 10.7803
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17459147PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer91.86e-2985137357
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                  ++rY+eCl+NhAa+lG+h++DGC+Efmps g++  aaal CaACgCHR+FHRre 
    Sof021192  85 QWRYRECLRNHAARLGAHVLDGCCEFMPS-GSD-GAAALACAACGCHRSFHRREA 137
                  789*************************9.555.589****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.9E-2686137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-1087136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-2387136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.94188136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
GYRADPRVRL PPPGFLPAHF QPPQLHPRKA ERERDRAAGA QQPQVRRHQE PARNGVLGGG  60
GGAAPASAAS TLGLASVGPV VEAAQWRYRE CLRNHAARLG AHVLDGCCEF MPSGSDGAAA  120
LACAACGCHR SFHRREAIPG GVAPAVAVSP SEMTLTVRAS ANFSRCMPLL LAPPKMHTPP  180
AGQSGRPGGP LPAGVTDLFR GVFSGAPSLG NRVV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.220750.0inflorescence| meristem
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314333.13e-78zinc-finger homeodomain protein 7 isoform X2
SwissprotQ8S3Q95e-29ZHD7_ORYSJ; Zinc-finger homeodomain protein 7
TrEMBLA0A194YRQ38e-77A0A194YRQ3_SORBI; Uncharacterized protein
STRINGSb04g030480.19e-74(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-14homeobox protein 22