PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof021283
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family WRKY
Protein Properties Length: 218aa    MW: 22490.3 Da    PI: 11.0535
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17404801PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-119330PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.52e-11192217126
                ---SS-EEEEEEE--TT-SS-EEEEE CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYr 26 
                ldD y+WrKYG  +vk++++prsYYr
  Sof021283 192 LDDRYKWRKYGPEVVKNTPHPRSYYR 217
                58***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-12177217IPR003657WRKY domain
SuperFamilySSF1182902.09E-10185217IPR003657WRKY domain
PROSITE profilePS5081114.297187218IPR003657WRKY domain
PfamPF031061.2E-7193217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MALGHGGQHM TSSSTGGAAG MAVSSSSTPT ITFAFQPSPP PTSALALAHH GVLGYGSSLL  60
LDHHPTTTTS SASSSHAASS TTLHHHLHGH AAAAAPHASL SPPTARASPP PPPHPWSTTT  120
ACEEGPAAPH DRQAGQGGRP PRGKGAAVIS EGSAALGVGA VRMKKAGGGG KARRKVREPR  180
FCFKTMKKAT LLDDRYKWRK YGPEVVKNTP HPRSYYRA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.231730.0inflorescence| meristem| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132878.16e-75uncharacterized protein LOC100194371
TrEMBLB4FIG21e-73B4FIG2_MAIZE; Putative WRKY transcription factor 13
STRINGGRMZM2G151444_P012e-74(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.15e-16WRKY DNA-binding protein 13