PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc00g011550.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 194aa    MW: 22224.8 Da    PI: 4.1778
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc00g011550.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-1620110199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+++lt+ d  +++rl++p  fa++h ++  ++  + le ++g+ Wev++  ++++g+++l+kGW++F++   ++++ +++F+++ r +f 
  Solyc00g011550.1.1  20 FIQILTSLD--ELRRLRIPVVFAKRHCENMLNP--VFLEAPHGKAWEVEV--ENSQGQIWLAKGWSDFCDYYSIRVKSVLMFTYNPRCQF- 103
                         566674444..55679**********4444444..***************..********************************988888. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                           v ++++
  Solyc00g011550.1.1 104 -SVAIYDQ 110
                         .7777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-2112111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-1913110IPR015300DNA-binding pseudobarrel domain
CDDcd100173.53E-1618109No hitNo description
PROSITE profilePS5086311.80118111IPR003340B3 DNA binding domain
SMARTSM010196.8E-920111IPR003340B3 DNA binding domain
PfamPF023622.7E-1322109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MANEFHGSSL RSSSPNNPKF IQILTSLDEL RRLRIPVVFA KRHCENMLNP VFLEAPHGKA  60
WEVEVENSQG QIWLAKGWSD FCDYYSIRVK SVLMFTYNPR CQFSVAIYDQ SKTEIEYPID  120
QDIESDEQEE DILFSQANAN IIEEDILILQ SNANVIEEDI PILQSNANVI EDEEEHIPVN  180
CPQTNANVIE QHK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc00g011550.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384760.0Solanum lycopersicum chromosome 3 clone C03SLm0006J07, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025884623.11e-141B3 domain-containing protein At1g49475-like
RefseqXP_025886111.11e-141B3 domain-containing protein At1g49475-like
TrEMBLA0A494GAC91e-132A0A494GAC9_SOLLC; Uncharacterized protein
STRINGSolyc00g011550.1.11e-140(Solanum lycopersicum)
STRINGSolyc03g042510.1.11e-140(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7499524
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-16B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]