PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc00g014800.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 164aa    MW: 18548 Da    PI: 10.615
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc00g014800.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000324870123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C +C++ F ++  L  H++ H
  Solyc00g014800.1.1 48 FSCLYCSRKFCTSQALGGHQNAH 70
                        89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.05E-54575No hitNo description
PROSITE profilePS5015710.974875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010582Biological Processfloral meristem determinacy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MADPSQLVYD FWNQSSNSST ASPTDMVDHQ HPPMIPKPKA KVPSSRMFSC LYCSRKFCTS  60
QALGGHQNAH KRERAASRRN MFSTTTTTTD SSDRNNKNSN MVRLHFLQNN NDMEPPSLIM  120
PQQNGKNSFL GRIPLTGVGL LHQLKLRKEW KDRKLGELME RNA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc00g014800.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1946941e-73Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05HBa0058L13, complete sequence
GenBankAC2123011e-73Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05HBa0060G21, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010314378.15e-98zinc finger protein GIS2-like
TrEMBLA0A494G8U11e-119A0A494G8U1_SOLLC; Uncharacterized protein
STRINGSolyc00g014800.1.11e-120(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92381723
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.11e-13C2H2 family protein