PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc00g057280.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 161aa    MW: 18551.4 Da    PI: 6.7569
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc00g057280.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.1e-1721112199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffkv++    + ++ l++p kfa++ ++   ++++++led+ gr+W  ++  +++ g+  +++GW +F  +++Lk+gDf+vF+++  ++ +
  Solyc00g057280.1.1  21 FFKVMII--ETFLQVLCFPPKFARSVSYL--TDREISLEDSYGRQWMATV--CNYNGSLAIRQGWDKFSGEHDLKVGDFLVFHYVP-DDLN 104
                         6666633..34445699*********877..4568***************..*******************************986.6666 PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                         + v++f++
  Solyc00g057280.1.1 105 FIVQIFET 112
                         79999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-2116115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.25319113IPR003340B3 DNA binding domain
CDDcd100172.88E-1820110No hitNo description
Gene3DG3DSA:2.40.330.101.5E-1920115IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.0E-921113IPR003340B3 DNA binding domain
PfamPF023621.4E-1521112IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MKACYDNDDG SLIYGKKIIS FFKVMIIETF LQVLCFPPKF ARSVSYLTDR EISLEDSYGR  60
QWMATVCNYN GSLAIRQGWD KFSGEHDLKV GDFLVFHYVP DDLNFIVQIF ETTGCEKIKF  120
SCNIGKEKPK EKTYQEITTI EESQSGKLLV HKNFRVILFL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc00g057280.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159850.12e-69PREDICTED: B3 domain-containing protein Os02g0598200-like
TrEMBLA0A494G9H11e-115A0A494G9H1_SOLLC; Uncharacterized protein
STRINGSolyc00g057280.1.11e-116(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Representative plantOGRP89721014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.16e-11B3 family protein