PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc00g107050.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YC

Protein Properties

Length: 145aa MW: 16857.9 Da PI: 5.732

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc00g107050.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	107.1	1.1e-33	35	134	2	97
NF-YC 2 lksfwekq...iekatdfknhel.PlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 +++fw++q +ek +fkn+ l rik+i+k+++dv++i++e+Pvll+kac++fi eltlrswl+a+en+rr lkk d++++++r d Solyc00g107050.1.1 35 MEMFWTDQereMEKIDNFKNNLLvSPNRIKNIMKTNKDVRRITSESPVLLAKACDFFIQELTLRSWLNAQENHRRILKKKDVTDVIKRNDN 125 789*99999****88762568************************************************************ PP NF-YC 89 fdflvdivp 97 +fl d+ Solyc00g107050.1.1 126 LNFLFDDDV 134 ***9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	9.39E-20	53	140	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	3.0E-22	61	131	IPR009072	Histone-fold
Pfam	PF00808	9.5E-14	61	117	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MENNSEKSTV NATQSVDAYS TMSHLNIEKI EQEYMEMFWT DQEREMEKID NFKNNLLVSP 60 NRIKNIMKTN KDVRRITSES PVLLAKACDF FIQELTLRSW LNAQENHRRI LKKKDVTDVI 120 KRNDNLNFLF DDDVNSTGGN NGHT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-23	42	131	3	91	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:17322342}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269\|PubMed:17322342}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc00g107050.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC246917	0.0	Solanum lycopersicum chromosome 3 clone HBa0117I12, complete sequence
GenBank	AC246984	0.0	Solanum lycopersicum chromosome 3 clone HBa0117I12, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025884653.1	1e-103	nuclear transcription factor Y subunit C-4-like
Swissprot	Q9FMV5	3e-31	NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A494G9T4	1e-101	A0A494G9T4_SOLLC; Uncharacterized protein
STRING	Solyc00g107050.1.1	1e-102	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12872	5	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	4e-30	nuclear factor Y, subunit C4

Link Out ? help Back to Top
Phytozome	Solyc00g107050.1.1

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Qi M, et al. QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests. Plant Biotechnol. J., 2019. 17(1): p. 252-263 [PMID:29878511]