PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc00g110070.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 840aa    MW: 91713.5 Da    PI: 8.3237
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc00g110070.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157e-05566589123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         y+C +C+ +F++k + +rH+++ H
  Solyc00g110070.1.1 566 YSCAYCPNRFKNKNEAERHQNSlH 589
                         99*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.53E-5537588No hitNo description
Gene3DG3DSA:3.30.160.605.7E-4556586IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.452566594IPR007087Zinc finger, C2H2
PROSITE patternPS000280568589IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MSSTPSIRIS QPQRQTSPAS YSGAQPEAAS PMPIPKAQES IPPPLPPPTH LPEISTGQDP  60
GWQWGNDPSS ADFGRSAAVN PGSSLLGGEL RSPLHAKELE HTRHASMDDG RRGSVLSTIA  120
GGQRDHEMLD AQQPNSDEEG ASRSRSGSTY RYVESLAEGV CHVERSIEKR QRDCIMSDRQ  180
NNGYSLSRAP LIDDFTCAIT DTHQNRLQSE RRLEQTTLVG SSNAYDKQLL SRIGGPSTPD  240
SKRQSVSSVT LGPGMQETAQ LAHAESERRN SQLRPLTVPT HERRQNSISD SPANSRFPHS  300
ASSGAVSPGF SGFWEHAPVD SNLLHTRNGS LSSSHRGSYD NTMYTHDDME DSRMSSLNIH  360
DRSPSGYSDD YTNGAKTGTK RRASSPPREL YYDDRASVGS ASGQSDAYNR RSLHQLPERG  420
SPVARFQPSH SSLSSAASYQ PRHGSFGSSL GVPSVPSSAT SYTSGRVSPN TLSPAIDPEL  480
ARARTPSGSG QSLKPSPILP NPQHGRTLSS STQGGAQSSG ADSAPHSRQS SLSQLQGMYI  540
CECCPKKPKK FDTEDDLRLH ESEKQYSCAY CPNRFKNKNE AERHQNSLHL RRHSWSCAAL  600
AGPEAAFHPS MTGNGADVCG YCGEEFANPP RWEVRAEHLN HVHKFGECNK AKKFFRADHF  660
RQHLKHSHAG TSGKWTNMLE NACMKDEPLP EKRAVTTNGG PAQAPVQDYW NGILATANIC  720
WLRSNITHEL MLAATQSTSA SLLAYQTRLF ETHLHGVFSC LLFLLTFFST LATKLTKYMA  780
SSLENEIIRS GQALHMGGMS PAIPLSLALV CKTALRGICS IGRFHWSEQR VPFFVHQHT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc00g110070.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004253439.10.0uncharacterized protein LOC101263992
TrEMBLA0A494G9T80.0A0A494G9T8_SOLLC; Uncharacterized protein
STRINGSolyc00g110070.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2586422