PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc00g217560.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 176aa MW: 19896.5 Da PI: 9.7428

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc00g217560.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	100.8	2.5e-31	43	140	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssa 70 g+kdrhsk+ T +g+RdRRvRls+++a +++dLqd+LG+d++sk ++WLl++ak+ i+el+ + Solyc00g217560.1.1 43 FGGKDRHSKVLTVKGLRDRRVRLSVPTALQVYDLQDKLGLDQPSKVVDWLLNEAKHDIDELPPLqirdqtglpltglrkeeeetmvV---- 129 689*************************************************************44444433333332222221110.... PP TCP 71 seceaesssssasnsssg.....k 89 ++++ + + Solyc00g217560.1.1 130 -----------SDED--RvkldvR 140 ...........1111..1223231 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	29.99	45	103	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.9E-30	45	149	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MISREVDPSD NNVIMIPKKS SLSSSSSWTR FKDPRIVRVS RAFGGKDRHS KVLTVKGLRD 60 RRVRLSVPTA LQVYDLQDKL GLDQPSKVVD WLLNEAKHDI DELPPLQIRD QTGLPLTGLR 120 KEEEETMVVS DEDRVKLDVR NLDLKGNSNS NNNKNSFSFG LYKDNHSSQS GIFIY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-19	50	104	1	55	Putative transcription factor PCF6
5zkt_B	3e-19	50	104	1	55	Putative transcription factor PCF6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc00g217560.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC246813	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 2 clone slm-33h20 map 2, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004253504.3	1e-119	transcription factor TCP17-like
TrEMBL	A0A494GA56	1e-123	A0A494GA56_SOLLC; Uncharacterized protein
STRING	Solyc00g217560.1.1	1e-124	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA821	24	99
Representative plant	OGRP180	15	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	2e-42	plastid transcription factor 1

Link Out ? help Back to Top
Phytozome	Solyc00g217560.1.1