PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g005200.1.1

Common Name

LOC101245979

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 297aa MW: 32996.4 Da PI: 8.5994

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g005200.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	104	126	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H Solyc01g005200.1.1 104 FSCSFCKREFSTSQALGGHQNAH 126 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.2E-4	95	130	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.53E-6	101	131	No hit	No description
PROSITE profile	PS50157	11.552	104	131	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	106	126	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MNVFAMNKSC SFETSSISAT SEESHEIVTK TKKMKEKVVE GSQLKQHESS SGGVLVDLKV 60 HNNNMNTNSS NLELKLFNST PARASESSNE ATPKQRCSSD ARTFSCSFCK REFSTSQALG 120 GHQNAHKQER ALAKRRNGLV DVVSSFGPPN YHPYYNPYSS FNSHIPFHTS FPTRSSLGLQ 180 GDSSMIHKPT SYPTWPYFSA YNFRLNPEKW SASSSSSSFF RTENVLGNNI LGASLENSHF 240 EKKNNTKGFS LMNSPINLDD SLNGNNHTKL GLGKEEAKKN NEEEEEESKL DLNLRL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g005200.1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004228939.1	0.0	zinc finger protein 1-like
TrEMBL	M1C304	1e-179	M1C304_SOLTU; Uncharacterized protein
STRING	Solyc01g005200.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3967	21	38
Representative plant	OGRP82	15	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	4e-17	zinc-finger protein 1

Link Out ? help Back to Top
Phytozome	Solyc01g005200.1.1
Entrez Gene	101245979

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]