PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g008170.2.1
Common NameLOC101257295
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 707aa    MW: 79142.9 Da    PI: 5.7146
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g008170.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.7e-07126146425
                         ---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                         ++C ff++ G+C+ Gd+C F+H
  Solyc01g008170.2.1 126 VPCIFFQQ-GICRKGDKCGFMH 146
                         69******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.4083361IPR000571Zinc finger, CCCH-type
SMARTSM003560.00443360IPR000571Zinc finger, CCCH-type
PfamPF156632.5E-113487No hitNo description
PROSITE profilePS5010311.2356389IPR000571Zinc finger, CCCH-type
SMARTSM003560.126588IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892122149IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-4122148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6123147IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-5126147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4127147IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MVGPTPPSTE VPVPASAPPP APVQLSAEEE AVKSNTDCVY FLASPLTCKK GSECEYRHSD  60
MARLNPRDCW YWLNGNCLNP KCAFRHPPLD GILEAQAPTA MGFSAAYKVS VAPMPQVPYA  120
SSKQDVPCIF FQQGICRKGD KCGFMHAPSF VSNNPTQPPV STASSETSTV TKAFDGVEKS  180
VQGTKLSQTN ALKPCELSKP VIKLGIHLTK KDNTFDEKVL PSNSVINREH SRNKPPSAPP  240
TNGISFSAPN RKQQPIGIDD HNSMQYKDDE ISREPSPGFD VLVDDELRGS DYYHGEDHYG  300
GRRENVGRNE YDMGDSADYD SVADIDQDMY PDVREYDSYD RLQGQYAWEQ HIASSERIPG  360
GSAHSERRRY DTVDSPEHVE ISDLRHRLSK HRRGNGLKSV IGHDFSSEKH VEGQANKSSR  420
RDARYLPSHD SSLNGGRLRG RIKLPVRSSS PDDRADLRLD RARDRGRLSS ERPQPYSYQG  480
RSRDRIKGRM QEDINSDGRN NRVPHVRRDI INVNNSDFLR PKSLAELKGR KTAESNEQQP  540
PRKRKFQKLD GGEDLSFEGP MPLKEILKRK RGGEGNMSSG GSEDDQHERK HQTERTSVTS  600
WSVDFPSSVT KNGSDLPIQK EDSKLVPKSA DHQSPLYRTE NELEAEEEMV VEGAGTQDHK  660
GYDQRDGHDD DYEPVEGEDY NFDEGDPDDE FLDDDDDDFA KKLGVH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.255750.0fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g008170.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2127684e-06Solanum lycopersicum DNA sequence from clone LE_HBa-206G16 on chromosome 12, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004228895.10.0zinc finger CCCH domain-containing protein 17
TrEMBLA0A3Q7E8X40.0A0A3Q7E8X4_SOLLC; Uncharacterized protein
STRINGSolyc01g008170.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40241633
Representative plantOGRP24551220
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]