PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g008880.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 200aa    MW: 22876.4 Da    PI: 10.4574
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g008880.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.3e-15126176255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +grW+AeIr     g k  +r +lg+f+t  eAa a+++a+ +++g
  Solyc01g008880.1.1 126 KYRGVRRRE-SGRWAAEIRY----GrKEaRRRWLGTFDTSREAALAYDKAAIEIKG 176
                         8*****999.7********9....54457***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-11126176IPR001471AP2/ERF domain
CDDcd000188.51E-25126182No hitNo description
PROSITE profilePS5103220.455126184IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-17126183IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.2E-24126183IPR001471AP2/ERF domain
SMARTSM003808.7E-24126190IPR001471AP2/ERF domain
PRINTSPR003672.9E-7127138IPR001471AP2/ERF domain
PRINTSPR003672.9E-7150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MCSLMDILNF FFVLFSFNEA MTTKDELKKN EALEKSSKVV RVKKFTKQLG KSSIIMPHVI  60
RIYMQDNDAT DSSSDDEENV QGGKSKRNKI ICNEIIIEKK NTKVVSKRMS SKKKRDKKLL  120
LENVEKYRGV RRRESGRWAA EIRYGRKEAR RRWLGTFDTS REAALAYDKA AIEIKGANAL  180
TNILDPPPKE STPSTPCHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-151261831471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g008880.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004228881.31e-146ethylene-responsive transcription factor ERF069-like
TrEMBLA0A3Q7ESJ41e-127A0A3Q7ESJ4_SOLLC; Uncharacterized protein
STRINGSolyc01g008880.1.11e-146(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.18e-21cytokinin response factor 5
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]