PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g009840.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 252aa    MW: 28678.7 Da    PI: 6.4348
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g009840.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS74.61.8e-238316276153
                GRAS  76 eelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg 153
                          + ++l+l+++v Pi kf h+t N+ +++a+eg+++  iiDfd +q lQWp+L+q+L sR ++p   ++RiTg+g+++++
  Solyc01g009840.1.1  83 FSSTVLRLLNQVRPISKFIHFTSNEIMVRAFEGKDQAYIIDFDTEQVLQWPNLFQSLVSRHKPPSqiHVRITGIGESKQD 162
                         44567789*****************************************************9987789*******96644 PP
2GRAS33.36.4e-11192231287326
                GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
                         +el++r+i+n++a eg++ +erhe ++kWr+ +e+ GF+ 
  Solyc01g009840.1.1 192 EELFARDIRNIIAREGRDMIERHEYFGKWRKLMEQGGFQM 231
                         567***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.1291251IPR005202Transcription factor GRAS
PfamPF035147.4E-2184162IPR005202Transcription factor GRAS
PfamPF035142.2E-8192231IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MLTGCSSSLD LPQAHHLPNN QWDDDAAELI SLLCVEAIGS RNVTGVNQLI ARLGRLAYLR  60
GSPDLVSNFH IIPTQVLDCL DVFSSTVLRL LNQVRPISKF IHFTSNEIMV RAFEGKDQAY  120
IIDFDTEQVL QWPNLFQSLV SRHKPPSQIH VRITGIGESK QDLGIDLWMH HVKEGENVAV  180
FHWTALVGFK TEELFARDIR NIIAREGRDM IERHEYFGKW RKLMEQGGFQ MHRDYRKGTA  240
SESNSVEDVL I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-163416326172Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g009840.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092793e-69Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0197J17, complete sequence
GenBankAP0102633e-69Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0019C20, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018828643.15e-61PREDICTED: scarecrow-like protein 28 isoform X2
SwissprotQ9CAN37e-39SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A3Q7E9R01e-146A0A3Q7E9R0_SOLLC; Uncharacterized protein
STRINGSolyc01g009840.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2598922
Representative plantOGRP55071521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.13e-41GRAS family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]