PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g010300.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 89aa    MW: 10052.7 Da    PI: 10.7877
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g010300.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.43.3e-071563149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        k i +k +r v f k  +   K A+ L   ++a v ++ fs+tgk y y
  Solyc01g010300.1.1 15 KMITSKVKRMVLFKKLWANFVKEAHDLYMTTGAHVTIVAFSPTGKAYAY 63
                        6799******************************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.325767IPR002100Transcription factor, MADS-box
SMARTSM004320.0025766IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-15981IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-7929IPR002100Transcription factor, MADS-box
PfamPF003192.3E-121763IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-72944IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-74465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MAQTKILRRQ KIKRKMITSK VKRMVLFKKL WANFVKEAHD LYMTTGAHVT IVAFSPTGKA  60
YAYDSSNNFD TIERFLNDSK ASAIEGGH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g010300.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2433601e-149Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-34i22 map 1, complete sequence
GenBankAC2438641e-149Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-18h5 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064763.11e-41uncharacterized protein LOC107009984
STRINGSolyc01g010300.1.11e-59(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1490855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.13e-11AGAMOUS-like 20
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]