PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g014720.1.1
Common NameLOC101260466
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 175aa    MW: 19845.5 Da    PI: 10.1563
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g014720.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18104154155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++y+GVr++k +g+WvAeIrd ++   +kr +lg+f ta+eAa a+++a+ +++g
  Solyc01g014720.1.1 104 KKYRGVRQRK-WGSWVAEIRDIRI---NKRRWLGSFATAYEAALAYDKAAIEIKG 154
                         59*******9.**********544...4***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.39E-28104160No hitNo description
PROSITE profilePS5103219.678105162IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-17105161IPR016177DNA-binding domain
SMARTSM003802.3E-31105168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-25105160IPR001471AP2/ERF domain
PfamPF008472.5E-12105154IPR001471AP2/ERF domain
PRINTSPR003673.3E-8106117IPR001471AP2/ERF domain
PRINTSPR003673.3E-8128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MASKDELHEN EVVKNQSKDA RGNKTNLMGD CSVVLQRVVR IYITDNDATD SSSDEEENHQ  60
GENSKRQKRI CKEIIIKNGK TNVTSKMVSS KEKNVTKTHQ ENVKKYRGVR QRKWGSWVAE  120
IRDIRINKRR WLGSFATAYE AALAYDKAAI EIKGPNALTN ILKPPPKEID PINH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-15104161462ATERF1
3gcc_A3e-15104161462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g014720.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2458290.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-4l7 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025885736.11e-126ethylene-responsive transcription factor ERF069-like
SwissprotQ9SUE33e-32CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A097F7I61e-120A0A097F7I6_9SOLA; CRF7
STRINGSolyc01g014720.1.11e-126(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-25cytokinin response factor 4
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  4. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]