PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g014960.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 250aa MW: 27457.6 Da PI: 6.2273

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g014960.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.7	0.00024	66	82	39	55
TCHHHHHHHHHHHHHHH CS HLH 39 sKaeiLekAveYIksLq 55 K++i+ekAv++I++Lq Solyc01g014960.1.1 66 GKSTIVEKAVNHIQKLQ 82 59**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.9E-5	62	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MNGGGENNHV FPWETNDGWP YQNLNGNQIG SGVTFEGDKL QDPNRFDTYE PLTAVNEVIE 60 ASTNAGKSTI VEKAVNHIQK LQNTFEKLEH EKLKRLQEHN VRCMSSQKFT NAGNNWEKYQ 120 GDQGSTHNSS SIASTTHGTN PLMVNNNIPT GFVTWSSPNV IVNVCGENAH ISVCCPKKSG 180 LFTFIGYVLG KHQIEILSAQ VSCDQFRSMF MIQAHATGGT GIAQVSEASR VEEMYKQVAI 240 EIMSFATPN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g014960.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019067637.1	1e-179	transcription factor bHLH95-like
TrEMBL	K4AUD0	0.0	K4AUD0_SOLLC; Uncharacterized protein
STRING	Solyc01g014960.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1324	23	69
Representative plant	OGRP1226	15	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	2e-19	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc01g014960.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]