PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g014970.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ZF-HD

Protein Properties

Length: 230aa MW: 25789 Da PI: 8.0587

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g014970.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	32	3e-10	21	69	4	55
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRr 55 ++Y++C Nh + +vD C+ f + g g++++++C C CH n HR Solyc01g014970.1.1 21 IVYRDC--NHSVLPSVSVVDSCQAFASG-GPIGSMESFQCQFCHCHQNVHRW 69 689999..9**************998.888*****************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	7.6E-9	22	68	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	10.215	23	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-4	23	68	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MANMLRANQG ARAICKPKDL IVYRDCNHSV LPSVSVVDSC QAFASGGPIG SMESFQCQFC 60 HCHQNVHRWL DVNNHQIAPP PAQQQTVTQR DVKPEVSSNT TNANRLGRIN AQIFDSLAVS 120 IELAESIMAR ATENWVNCNN KDVGNKSKKS WDEHVAEEYE KEQPQILANQ LELTLNMRSQ 180 NGKNKKIKKD EDEKPDGFEL YIKTKSKAIK KLQIAQAENN VFGQSYYPN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g014970.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015164998.1	1e-101	PREDICTED: zinc-finger homeodomain protein 7-like
TrEMBL	K4AUD1	1e-171	K4AUD1_SOLLC; Uncharacterized protein
STRING	Solyc01g014970.1.1	1e-172	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15798	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	3e-08	homeobox protein 31

Link Out ? help Back to Top
Phytozome	Solyc01g014970.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]