PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g021730.2.1

Common Name

LOC101264245

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 266aa MW: 30369.1 Da PI: 6.7799

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g021730.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	73.8	4.2e-23	5	139	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpk.....kvka..eek..ewy.fFskrdkkyatgkrknr.atk 79 GfrF+Ptd e v +L + ++gk ++ + + ++vd y k ePwd+ + + + e++ + y fF+++ kk+ +++r +r + + Solyc01g021730.2.1 5 KEGFRFSPTDAEAV-TFLLRFIAGKFMNDSGFiTTHVDTYgKQEPWDIYShgvacS--NddEDNdcSQYrFFITKLKKK-SESRYSRdVGN 91 68**********.8999999999988878835566877367*73356541..222333343352666666655.56788886889 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g Wk++ k+k+v +k+g ++g kk++ + + + + ++ dW+m+ey+l Solyc01g021730.2.1 92 KGSWKQQDKSKSVRRKGGPVIGYKKSMSYMN-KGYNKKNGDWLMKEYTL 139 *************************94.5555589******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-21	4	161	IPR003441	NAC domain
PROSITE profile	PS51005	25.034	4	162	IPR003441	NAC domain
Pfam	PF02365	3.0E-14	6	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MGNLKEGFRF SPTDAEAVTF LLRFIAGKFM NDSGFITTHV DTYGKQEPWD IYSHGVACSN 60 DDEDNDCSQY RFFITKLKKK SESRYSRDVG NKGSWKQQDK SKSVRRKGGP VIGYKKSMSY 120 MNKGYNKKNG DWLMKEYTLP EYLLDKFDKD CRDYVLCSIK KRTRSKTQTK EKLKLVNIVP 180 EESTNLEDQS SATVGSTSFT EELQGRGVDA GGYLPQLELQ NEMHEGTSIF VETLPAPFTF 240 EPTSMLDFDY QYLPADFDFL RSITA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g021730.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC245978	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-3l17 map 1, complete sequence
GenBank	AC246193	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-27p13 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004228763.1	0.0	NAC domain-containing protein 78-like
TrEMBL	A0A3Q7ECE5	0.0	A0A3Q7ECE5_SOLLC; Uncharacterized protein
STRING	Solyc01g021730.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2219	12	54
Representative plant	OGRP5881	2	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44290.1	1e-12	NAC domain containing protein 60

Link Out ? help Back to Top
Phytozome	Solyc01g021730.2.1
Entrez Gene	101264245

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]