PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g044520.1.1
Common NameLOC104646550
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 172aa    MW: 19382 Da    PI: 7.5011
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g044520.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.61.4e-40171171101
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+C +dC l pyfp ++p kf ++hk+FGasn++k+lk+lp ++r da++slvyeA+ar+rdP+yG++gvi++l+ q+ +l+
  Solyc01g044520.1.1  17 PCAACKFLRRRCLEDCLLKPYFPPNEPMKFIVAHKIFGASNIIKVLKDLPATQRGDAVNSLVYEANARMRDPIYGSAGVISHLHDQMTKLQ 107
                         7****************************************************************************************** PP

              DUF260  92 aelallkeel 101
                         a++al+++++
  Solyc01g044520.1.1 108 AQVALAQAQI 117
                         *****99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.22716117IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-3917114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MADYSSCSTE NRNLFTPCAA CKFLRRRCLE DCLLKPYFPP NEPMKFIVAH KIFGASNIIK  60
VLKDLPATQR GDAVNSLVYE ANARMRDPIY GSAGVISHLH DQMTKLQAQV ALAQAQISNL  120
QSQNANLMTL IPKQQSLSDH HYKFQNSTPL SYDDNTEIWH LGDTTWDSFW S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-381611710111LOB family transfactor Ramosa2.1
5ly0_B2e-381611710111LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g044520.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384520.0Solanum lycopersicum chromosome 1 clone C01HBa0133B03, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010318580.11e-128LOB domain-containing protein 1-like
SwissprotQ9LQR02e-54LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A3Q7ED821e-127A0A3Q7ED82_SOLLC; Uncharacterized protein
STRINGSolyc01g044520.1.11e-127(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.19e-51LOB domain-containing protein 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]