PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g058130.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 164aa MW: 18807.5 Da PI: 9.1772

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g058130.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.2e-05	16	38	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C +F+++ L H+++H Solyc01g058130.1.1 16 YRCTTCRDVFTSSQGLAGHQNKH 38 9*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.82E-5	15	43	No hit	No description
PROSITE profile	PS50157	10.221	16	43	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	18	38	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MDDQRIIPNP GGVLCYRCTT CRDVFTSSQG LAGHQNKHKF ESTWIRDAPH EKFFCPSTEL 60 PALYLQLGTR KSNPTVLRGH GHFYHLRRRS QTVYGPRRKP GRPRAGLYEP QQTMVLQVAP 120 VFEGSPISPL LIQDQNLFAT RPYQLVEKNY IDDKEEIDLE LRL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g058130.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3Q7EEP7	1e-119	A0A3Q7EEP7_SOLLC; Uncharacterized protein
STRING	Solyc01g058130.1.1	1e-119	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6643	8	21

Link Out ? help Back to Top
Phytozome	Solyc01g058130.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]