PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g060370.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 98aa    MW: 10814.2 Da    PI: 4.345
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g060370.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.23.8e-1015744099
                        ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE-S CS
                  B3 40 desgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfrk 99
                        + sg++W++ +   + + +y +++GWk F ++n+LkegD + F+l+  + ++ e++++++r+
  Solyc01g060370.1.1 15 TYSGKKWNLFF--GGAKTKYKFSTGWKIFGDDNNLKEGDGIAFELSeCNpDNVEFKIQILRE 74
                        569********..99999**************************987777888888888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.576175IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-101474IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-71573IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-91675IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-91773No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MNKELPFAGG PGVLTYSGKK WNLFFGGAKT KYKFSTGWKI FGDDNNLKEG DGIAFELSEC  60
NPDNVEFKIQ ILRENFPAEL VPEDVEGINT DNPIIIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g060370.1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068102.11e-64B3 domain-containing protein Os04g0386900-like
TrEMBLA0A3Q7EF642e-63A0A3Q7EF64_SOLLC; Uncharacterized protein
STRINGSolyc01g060370.1.13e-64(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Representative plantOGRP7665916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-07B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]