PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g067340.1.1
Common NameLOC104647475
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 219aa    MW: 24882.6 Da    PI: 7.9164
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g067340.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46e-0968113855
                         HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          Er+RR ++ + ++ L++l+P+ +   +  K +   i+ + ++YIk L+
  Solyc01g067340.1.1  68 KERNRRGKMAELYSLLQSLVPTiS---HIHKATREKIVAESIDYIKRLE 113
                         6*********************99...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.63360112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-1166135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-666118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.35E-767116No hitNo description
PfamPF000103.0E-668113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1069122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5167110.272153218IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MWQEMMMKEE AEEEEIERLF MGVMGGYKDA FMPPLTDFST INEMGSSSSY GNKRHKKEAP  60
LADDNMHKER NRRGKMAELY SLLQSLVPTI SHIHKATREK IVAESIDYIK RLEEEVLRLK  120
NLKKSVVVYK PALSQWRNRV SSVNATVSKG LAFFGIQFQL TQGLMTNIFS VLDKHQAEVL  180
AANISVSDHQ LTTLTITVTI GNNESNTVES IRRELLLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g067340.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2434880.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-12k2 map 1, complete sequence
GenBankAC2465880.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-70o17 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321200.21e-162uncharacterized protein LOC104647475
TrEMBLA0A3Q7EFT01e-145A0A3Q7EFT0_SOLLC; CASP-like protein
STRINGSolyc01g067340.1.11e-161(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132481415
Representative plantOGRP1384734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-07bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]